At any rate, I've done some poking around and there's a few things that I've noticed:
1) The code folding margin is quite large and if you click and drag in it there is no selection highlighted. I seem to recall that there was something similar wrong with 3.95 quite a while back? Is it possible to have that area reduced like it was previous to 3.96?
2) The bookmarking is indeed not working. No bookmarks set at all. At least not with Alt-1 etc. Has this changed? I like the look of the new Alt-J box. Will there be a text box to just enter the bookmark number into and just to? I find it's a lot faster to use the keyboad than the mouse for such things. Maybe make the first lines selectable by number, much like the new File List? Thanks for doing that BTW, I use it a LOT!
3) As for Smart Indent, I suppose it's working because it's still not what I want. I want it to work the way it was before, which was to line up with the line above, not the line below. I am finding it really annoying when I'm working inside a for() loop, hit enter, hit enter again for a blank bit of whitespace, and end up with the cursor backspaced a tab stop instead of still lined up where I need it.
I'm gonna go back to my 3.95z installation because I need to get back to work instead of having fun with my favorite editor. Let us know when there's a new 3.96 patch and I'll give it a whirl!